Loci

Tandem repeat loci associated with Mendelian diseases. Full Dataset
Filtersall results
Motif length
Tags
Gene
Disease
Description
Position hg38
Motif (len)
Inheritance
ABCD3
OPDM5
Oculopharyngodistal myopathy type 5
(3)
AD
AFF2
FRAXE
Intellectual developmental disorder, Fragile X intellectual disability
(3)
XR
AFF3
FRA2A
Intellectual disability associated with fragile site FRA2A
(3)
AD
AR
SBMA
Spinal and bulbar muscular atrophy, Kennedy Disease
(3)
XR
ARX
EIEE1
Early-infantile epileptic encephalopathy
(3)
XR
ARX
PRTS
Partington syndrome
(3)
XR
ATN1
DRPLA
Dentatorubral-Pallidoluysian Atrophy
(3)
AD
ATXN1
SCA1
Spinocerebellar ataxia type 1
(3)
AD
ATXN10
SCA10
Spinocerebellar ataxia type 10
(5)
AD
ATXN2
SCA2
Spinocerebellar ataxia type 2
(3)
AD/AR
ATXN3
SCA3, MJD
Spinocerebellar ataxia type 3/Machado-Joseph disease
(3)
AD
ATXN7
SCA7
Spinocerebellar ataxia type 7
(3)
AD
ATXN8OS
SCA8
Spinocerebellar ataxia type 8
(3)
AD
BEAN1
SCA31
Spinocerebellar ataxia type 31
(5, 5)
AD
C9orf72
FTDALS1
Frontotemporal dementia (FTD) and/or amyotrophic lateral sclerosis (ALS)
(6)
AD
CACNA1A
SCA6
Spinocerebellar ataxia type 6
(3)
AD
CBL
JBS
Jacobsen syndrome (FRAX11B fragile site)
(3)
AD
CEL
MODY8
Maturity-Onset Diabetes of the Young Type 8
(32)
AD
CNBP
DM2
Myotonic dystrophy type 2
(4)
AD
COMP
EDM1, PSACH
Multiple epiphyseal dysplasia, Pseudoachondroplasia
(3)
AD
CSNK1E
EPM, DEE
Progressive Myoclonic Epilepsy and Developmental and Epileptic Encephalopathy
(3)
AR
CSTB
EPM1
Progressive Myoclonic Epilepsy Type 1 (EPM1), a.k.a Unverricht-Lundborg Disease (ULD)
(12)
AR
DAB1
SCA37
Spinocerebellar ataxia type 37
(5)
AD
DIP2B
FRA12A
Intellectual developmental disorder, FRA12A type
(3)
AD
DMD
DMD
Duchenne muscular dystrophy
(3)
XR
DMPK
DM1
Myotonic dystrophy type 1
(3)
AD
EIF4A3
RCPS
Richieri-Costa-Pereira syndrome
(20)
AR
FAM193B
OPDM
Oculopharyngodistal myopathy
(3)
AD
FGF14
SCA27B
Spinocerebellar ataxia 27B
(3)
AD
FMR1
FXS, FXTAS, POF1
Fragile X syndrome (FXS), fragile X-associated tremor/ataxia syndrome (FXTAS), and fragile X-associated primary ovarian insufficiency FXPOI/POF1
(3)
XD
FOXL2
BPES
Blepharophimosis, epicanthus inversus, and ptosis
(3)
AD/AR
FXN
FRDA
Friedreich ataxia
(3)
AR
GIPC1
OPDM2
Oculopharyngodistal myopathy type 2
(3)
AD
GLS
GDPAG
Glutaminase deficiency
(3)
AR
GOLGA8A
aFTLD-U
Atypical frontotemporal lobar degeneration with ubiquitinated inclusions (aFTLD-U)
(2)
HOXA13
HFG-I
Hand-foot-genital syndrome 1
(3)
AD
HOXA13
HFG-II
Hand-foot-genital syndrome 2
(3)
AD
HOXA13
HFG-III
Hand-foot-genital syndrome 3
(3)
AD
HOXD13
SD5
Syndactyly
(3)
AD
HTT
HD
Huntington disease
(3)
AD
JPH3
HDL2
Huntington disease-like 2
(3)
AD
LRP12
OPDM1
Oculopharyngodistal myopathy type 1
(3)
AD
MARCHF6
FAME3
Familial adult myoclonic epilepsy type 3
(5)
AD
MIR7-2
CHNG3
Nongoitrous congenital hypothyroidism-3
(4)
AD
MUC1
ADTKD
Autosomal dominant tubulointerstitial kidney disease
(61)
AD
NAXE
NME
NAXE-related mitochondrial encephalopathy
(5)
AR
NIPA1
ALS1
Amyotrophic lateral sclerosis
(3)
AD
NOP56
SCA36
Spinocerebellar ataxia type 36
(6)
AD
NOTCH2NLC
NIID
Neuronal intranuclear inclusion disease, Alzheimer disease and parkinsonism phenotype, Oculopharyngodistal myopathy (OPDM) type 3, hereditary essential tremor type 6
(3)
AD
NUTM2B-AS1
OPML1
Oculopharyngeal myopathy with leukoencephalopathy 1
(3)
AD
PABPN1
OPMD
Oculopharyngeal muscular dystrophy
(3)
AD/AR
PHOX2B
CCHS
Congenital central hypoventilation syndrome
(3)
AD
PLIN4
MRUPAV
Myopathy with Rimmed Ubiquitin-Positive Autophagic Vacuolation, PLIN4-Related Myopathy
(99)
AD
POLG
CPEO
Progressive external ophthalmoplegia, Parkinson's disease
(3)
PPP2R2B
SCA12
Spinocerebellar ataxia type 12
(3)
AD
PRDM12
HSAN VIII
Hereditary sensory and autonomic neuropathy type VIII
(3)
AR
PRNP
CJD
Creutzfeldt-Jakob disease and Gerstmann-Straussler-Schneiker syndrome
(24)
AD
RAI1
FAME8
Familial adult myoclonic epilepsy type 8
(5)
AD
RAPGEF2
FAME7
Familial adult myoclonic epilepsy type 7
(5)
AD
RFC1
CANVAS
Cerebellar ataxia, neuropathy, and vestibular areflexia syndrome
(5, 5, 5, 5)
AR
RILPL1
OPDM4
Oculopharyngodistal myopathy type 4
(3)
AD
RUNX2
CCD
Cleidocranial dysplasia
(3)
AD
SAMD12
FAME1
Familial adult myoclonic epilepsy type 1
(5)
AD
SOX3
XLID, PHPX
X-linked intellectual developmental disorder with isolated growth hormone deficiency; X-linked panhypopituitarism (PHPX)
(3)
XR
STARD7
FAME2
Familial adult myoclonic epilepsy 2
(5)
AD
TAF1
XDP
X-linked dystonia-parkinsonism (XDP) a.k.a. Dystonia 3, torsion, X-linked (DYT3)
(6)
XR
TBC1D7
OPDM
Oculopharyngodistal myopathy
(3)
AD
TBP
SCA17
Spinocerebellar ataxia type 17
(3)
AD
TBX1
TOF
Tetralogy of Fallot
(3)
AD
TCF4
FECD3
Fuchs endothelial corneal dystrophy 3
(3)
AD
THAP11
SCA51
Spinocerebellar ataxia 51
(3)
AD
TNRC6A
FAME6
Familial adult myoclonic epilepsy type 6
(5)
AD
TYMS
CPUM
Congenital Progressive Universal Melanosis
(6)
AR
VWA1
HMNR7
Neuronopathy, distal hereditary motor, autosomal recessive 7
(10)
AR
XYLT1
DBQD2, BSS
Baratela-Scott Syndrome/Desbuquois dysplasia 2
(3)
AR
YEATS2
FAME4
Familial adult myoclonic epilepsy 4
(5)
AD
ZFHX3
SCA4
Spinocerebellar ataxia 4
(3)
AD
ZIC2
HPE5
Holoprosencephaly-5
(3)
AD
ZIC3
VACTERLX
X-linked VACTERL syndrome
(3)
XR
ZNF713
FRA7A
Autism spectrum disorder associated with fragile site FRA7A
(3)
AD
Suggest New

Downloads

T2T-chm13
hg19
hg38
General
a general-purpose extended bed file for filtering and annotating loci
TRGT
for genotyping full allele sequences in PacBio HiFi reads
Atarva
⚠️ for genotyping full allele sequences in long-read data
LongTR
⚠️ for genotyping full allele sequences in long-read data
Straglr
⚠️ for genotyping allele sizes in long read-data
Stranger
⚠️ for annotating TRGT or ExpansionHunter allele sizes with pathologic implications.

⚠️ Still under development, use with caution

Plots

High-level, visual overview of loci.