Locus OPMD PABPN1
Disease ID
OPMD
Gene ID
PABPN1
Updated
Jun 15, 2026
v2.22.0
v2.22.0
Other gene loci
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Clinical Links
Bioinformatical Links
Disease
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Name Oculopharyngeal muscular dystrophy
Inheritance
Description
Prevalence
1 100,000
HPO Terms
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Association
Mendelian
Locus
Details Disease is caused by a GCN polyalanine expansion in the first exon of PABPN1. Most known patients have (GCG)+, but GCN (any polyalanine) may be pathogenic6 . This locus is heterozygous in ~90% of cases (autosomal dominant inheritance), while expansions are biallelic in ~10% of cases (consistent with autosomal recessive inheritance). Disease is generally more severe in cases with two expanded alleles. Age of onset is inverse to allele size, while penetrance and severity increase with allele size6 . Mild, late-onset disease can occur in individuals with a (GCN)10(GCN)11 genotype, suggesting variable penetrance9 . The definition of this locus differs in the literature with prior work counting exact GCG motifs for a benign size of (GCG)610 , while later resources count GCNs (any alanine codon), widening the region by 4 motifs to a benign size of (GCN)106,2 . STRchive is using the GCN definition.
Mechanism Polyalanine expansions leading to cellular toxicity (loss of function) as well as abnormal aggregation and inefficient protein degradation, which may impact mRNA processing6 .
GoF/LoF
Detection
Flanking PCR with fragment analysis has accurately detected expansions [@pmid:27980005]. Heterozygous expansions have been sized by Sanger sequencing. Biallelic expanded variants were assessed using short-read sequencing or PCR fragment analysis.
Alleles
Ref. Motif Reference motif, reference orientation
GCN
Ranges
Benign (ref.) Benign motif, reference orientation
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Benign (gene) Benign motif, gene orientation
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Pathogenic (ref.) Pathogenic motif, reference orientation
GCN
Pathogenic (gene) Pathogenic motif, gene orientation
CNG
Unknown (ref.) Unknown motif, reference orientation
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Unknown (gene) Unknown motif, gene orientation
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Interruption (ref.) Interruption motif, reference orientation
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Interruption (gene) Interruption motif, gene orientation
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gnomAD
Pathogenic genotype frequency data is not displayed for this locus because a substantial number of large alleles failed manual review by the gnomAD team.
References
Direct supporting references for info on this page.
2
Repeat expansion disorders.
Zhongbo,Chen, Huw R,Morris, James,Polke, Nicholas W,Wood, Sonia,Gandhi, Mina,Ryten, Henry,Houlden, Arianna,Tucci
Practical neurology · 2025-05-15
pmid:393490433
Neurological disorders caused by novel non-coding repeat expansions: clinical features and differential diagnosis.
Elisa,Vegezzi, Hiroyuki,Ishiura, D Cristopher,Bragg, David,Pellerin, Francesca,Magrinelli, Riccardo,Currò, Stefano,Facchini, Arianna,Tucci, John,Hardy, Nutan,Sharma, Matt C,Danzi, Stephan,Zuchner, Bernard,Brais, Mary M,Reilly, Shoji,Tsuji, Henry,Houlden, Andrea,Cortese
The Lancet. Neurology · 2024-07-01
pmid:388767504
The genetic and clinical characteristics of oculopharyngeal muscular dystrophy patients in Israel.
Merav,Ben-David, Lior,Greenbaum, Vera,Nikitn, Alex,Zvulunov, Hagit,Charas, Naama,Divon, Tali,Barkan, Odelia,Chorin, Haike,Reznik-Wolf, Ofira,Zloto, Limor,Benyamini, Shahar,Shelly, Amir,Dori
Orphanet journal of rare diseases · 2026-05-19
pmid:421572755
Profiling of Short-Tandem-Repeat Disease Alleles in 12,632 Human Whole Genomes.
Haibao,Tang, Ewen F,Kirkness, Christoph,Lippert, William H,Biggs, Martin,Fabani, Ernesto,Guzman, Smriti,Ramakrishnan, Victor,Lavrenko, Boyko,Kakaradov, Claire,Hou, Barry,Hicks, David,Heckerman, Franz J,Och, C Thomas,Caskey, J Craig,Venter, Amalio,Telenti
American journal of human genetics · 2017-11-02
pmid:291000846
Oculopharyngeal Muscular Dystrophy
Capucine,Trollet, Alexis,Boulinguiez, Fanny,Roth, Tanya,Stojkovic, Gillian,Butler-Browne, Teresinha,Evangelista, Jean,Lacau St Guily, Pascale,Richard
GeneReviews® · 1993-01-01
genereviews:NBK11267
Choked: A Case Report of Oculopharyngeal Muscular Dystrophy Mimicking Hypothyroidism From the Philippines.
Jerome M,Infante, Belinda Lioba,Nepomuceno
Cureus · 2023-06-27
pmid:375196168
Clinical and genetic features of a large homogeneous cohort of oculopharyngeal muscular dystrophy patients from the Canary Islands.
Jorge,Alonso-Pérez, Juan Carlos,de León Hernández, Helena,Pérez-Pérez, María Dolores,Mendoza-Grimón, Antonio José,Gutierrez-Martinez, Ioanna,Hadjigeorgiou, Fernando,Montón-Álvarez, Lidia,González-Quereda, Alicia,Alonso-Jimenez, Xavier,Suárez-Calvet, Jordi,Díaz-Manera
European journal of neurology · 2022-02-03
pmid:351127619
Correlation between PABPN1 genotype and disease severity in oculopharyngeal muscular dystrophy.
Pascale,Richard, Capucine,Trollet, Tanya,Stojkovic, Alix,de Becdelievre, Sophie,Perie, Jean,Pouget, Bruno,Eymard
Neurology · 2016-12-23
pmid:2801192910
Short GCG expansions in the PABP2 gene cause oculopharyngeal muscular dystrophy.
B,Brais, J P,Bouchard, Y G,Xie, D L,Rochefort, N,Chrétien, F M,Tomé, R G,Lafrenière, J M,Rommens, E,Uyama, O,Nohira, S,Blumen, A D,Korczyn, P,Heutink, J,Mathieu, A,Duranceau, F,Codère, M,Fardeau, G A,Rouleau
Nature genetics · 1998-02-01
pmid:9462747Additional Literature
Additional literature related to this locus.
Raw PubMed search results
(All PubMed results returned by searching for this gene, tandem
repeats, and disease, in medline format)
Computational Short Tandem Repeat Genotyping Reveals Clinically Relevant Expansions in a Large Turkish Neurodegeneration Disease Cohort.
Zakhiriddin,Khojakulov, Robin J,Palvadeau, Müge,Kovancılar-Koç, Irmak,Atay, Irmak,Şahbaz, Şeyma,Tekgül, Ayça,Şahin, Esmer Zeynep Duru,Badakal, Tuğçe,Gül-Demirkale, Vildan,Çiftçi, Elif,Bayraktar, Ceren,Tunca, Natalia,Smolina, Fulya,Akçimen, Ayşe Nazlı,Başak
International journal of molecular sciences · 2026-05-13
pmid:42196324The genetic and clinical characteristics of oculopharyngeal muscular dystrophy patients in Israel.
Merav,Ben-David, Lior,Greenbaum, Vera,Nikitn, Alex,Zvulunov, Hagit,Charas, Naama,Divon, Tali,Barkan, Odelia,Chorin, Haike,Reznik-Wolf, Ofira,Zloto, Limor,Benyamini, Shahar,Shelly, Amir,Dori
Orphanet journal of rare diseases · 2026-05-19
pmid:42157275Evaluation of Epidermal Growth Factor Receptor and Its Inducible Feedback Inhibitor Leucine Rich Repeats and Immunoglobulin Like Domains 1 as Prognostic Marker in Oral Cancer.
Deepika,Verma, S S,Chauhan, Joginder,Kumar, Mohit,Arora, Qulsum,Akhtar, Lokesh,Kadian, Prerna,Jain, Vivek,Nayyar, Ajoy,Roychaudhury, Deepika,Mishra, Alok,Thakar, Riyaz A,Mir
Molecular carcinogenesis · 2026-03-01
pmid:41764774Recurrent Pneumonia in a Patient With Oculopharyngeal Muscular Dystrophy (OPMD) due to GCN Expansion in the
Claudia,Mañana Valdés, Miguel,Arias Guillén, Germán,Moris de la Tassa
Open respiratory archives · 2026-01-15
pmid:41676387Oculopharyngeal muscular dystrophy (OPMD) associated alanine expansion impairs the function of the nuclear polyadenosine RNA binding protein PABPN1 as revealed by proximity labeling and comparative proteomics.
Allison T,Mezzell, Yu,Zhang, Alexandra M,Perez, Katherine E,Vest
PLoS genetics · 2026-01-26
pmid:41587185Feasibility of long-read sequencing to identify molecular alterations in an Indonesian cohort of locally advanced to advanced nasopharyngeal cancer.
,Handoko, Marlinda,Adham, Lisnawati,Rachmadi, Demak Lumban,Tobing, ,Asmarinah, ,Fadilah, Wei,Dai, Anne Wing Mui,Lee, Soehartati A,Gondhowiardjo
Scientific reports · 2025-07-01
pmid:40594369Polyalanine Expansion in PABPN1 Alters the Structure and Dynamics of Its Nuclear Aggregates in Differentiated Muscle Cells.
Sander D,Mallon, Erik,Bos, Vahid,Sheikhhassani, Milad,Shademan, Lenard M,Voortman, Alireza,Mashaghi, Thomas H,Sharp, Vered,Raz
FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025-06-30
pmid:40552959ATXN2L primarily interacts with NUFIP2, the absence of ATXN2L results in NUFIP2 depletion, and the ATXN2-polyQ expansion triggers NUFIP2 accumulation.
Jana,Key, Luis-Enrique,Almaguer-Mederos, Arvind Reddy,Kandi, Nesli-Ece,Sen, Suzana,Gispert, Gabriele,Köpf, David,Meierhofer, Georg,Auburger
Neurobiology of disease · 2025-04-11
pmid:40220918Different outcomes of endurance and resistance exercise in skeletal muscles of Oculopharyngeal muscular dystrophy.
Alexis,Boulinguiez, Jamila,Dhiab, Barbara,Crisol, Laura,Muraine, Ludovic,Gaut, Corentin,Rouxel, Justine,Flaire, Hadidja-Rose,Mouigni, Mégane,Lemaitre, Benoit,Giroux, Lucie,Audoux, Benjamin,SaintPierre, Arnaud,Ferry, Vincent,Mouly, Gillian,Butler-Browne, Elisa,Negroni, Alberto,Malerba, Capucine,Trollet
Journal of cachexia, sarcopenia and muscle · 2024-08-07
pmid:39113268