Curation SCA7 ATXN7

Gene ATXN7
Disease SCA7
Inheritance AD
Score

12 + 6 = 18 / 18

Genetic + experimental = total
Classification
0
18
Refuted
Moderate
Definitive
Last Updated 08/12/2025
Pubs Reviewed 7
Publication Span 22.92 years
Publication Interval 22.92 years
Curator(s) Macayla Weiner, Laurel Hiatt
Description

A heterozygous pathogenic CAG repeat expansion in the coding region of ATXN7 causes autosomal dominant spinocerebellar ataxia type 7 (SCA7), characterized by progressive cerebellar ataxia and retinal degeneration. Uploaded studies support the locus-disease relationship through segregation of expanded CAG alleles in SCA7 families, molecularly confirmed case/control cohorts across multiple populations, repeat-length associations with age at onset/anticipation, and experimental evidence that polyQ-expanded ataxin-7 disrupts STAGA/TFTC-mediated transcriptional regulation, forms nuclear inclusions, and causes disease-relevant phenotypes in cell and animal models.

Genetic evidence

Total: 12

Category
Type
Citation
Score
Details
Singular Evidence
Probands
6

GeneReviews summarizes SCA7 as established by identification of a heterozygous abnormal ATXN7 CAG trinucleotide repeat expansion in a proband and notes that more than 1,000 affected individuals have been identified worldwide.

Collective Evidence
Allele
2

GeneReviews defines ATXN7 CAG repeat ranges as normal 7–27, mutable normal 28–33, pathogenic reduced penetrance 34–36, and pathogenic full penetrance 37–460 repeats; longer repeats correlate with earlier onset, greater severity, and faster progression.

Collective Evidence
Segregation
1.5

In 8 SCA7 families, RED detected 150-240 bp CAG expansion products in all affected individuals; expansions cosegregated with disease (P < 0.000001, n = 66), with repeat-size instability observed in affected offspring.

Statistics
Case-control data
6

Uploaded case-control/cohort studies support ATXN7 CAG expansion enrichment in SCA7: Chinese families showed affected alleles of 44-85 CAG versus 9-18 in 67 controls; Indian SCA7 families had 22 affected individuals with 40-94 CAG expansions and 382 population controls; rs6798742 haplotype association was replicated in Indian and Mexican expansion carriers. PMID 30721448 is a biomarker case-control study, not primary expansion-enrichment evidence.

Experimental evidence

Total: 6

Category
Type
Citation
Score
Details
Function
Biochemical function
0.5

Gene-level/locus-relevant evidence: ataxin-7 is a core STAGA/TFTC transcription co-activator component with histone acetyltransferase-related function; polyQ expansion alters this activity.

Function
Protein interaction
0.5

Gene-level/locus-relevant evidence: ataxin-7 is incorporated into STAGA/TFTC transcription co-activator complexes and mutant polyQ-expanded ataxin-7 perturbs interactions with transcriptional regulatory machinery.

Function
Regulatory impact
0.5

PolyQ-expanded ataxin-7 alters SAGA/STAGA/TFTC histone acetyltransferase activity and chromatin/transcriptional regulation in disease-relevant experimental systems.

Functional Alteration
Patient cells
1

Patient CNS tissue shows mutant ataxin-7 nuclear inclusions with ubiquitin-proteasome components and neurodegenerative pathology in SCA7-vulnerable regions; evidence is tissue/cell-level but not a separate locus-genotyping cohort.

Functional Alteration
Non-patient cells
0.5

Non-patient cell models expressing mutant polyQ-expanded ataxin-7 show enhanced nuclear localization/toxicity and activation of apoptotic pathways, supporting a repeat-length-dependent toxic gain of function.

Models
Non-human model organism
2

SCA7 mouse models expressing polyQ-expanded ataxin-7 develop gait ataxia, nuclear inclusions, Purkinje-cell dendritic degeneration, and non-cell-autonomous cerebellar pathology resembling human SCA7.

Models
Cell culture
1

Cell-culture models expressing polyQ-expanded ataxin-7 reproduce disease-relevant molecular phenotypes, including altered transcriptional regulation, mutant protein accumulation, and cellular toxicity.

Maximum score caps apply at evidence type, category, and supercategory levels, so section totals may be lower than the raw sum of row scores.