Curation SCA1 ATXN1

Gene ATXN1
Disease SCA1
Inheritance AD
Score

12 + 2.5 = 14.5 / 18

Genetic + experimental = total
Classification
0
18
Refuted
Moderate
Definitive
Last Updated 08/12/2025
Pubs Reviewed 7
Publication Span 36.33 years
Publication Interval 36.33 years
Curator(s) Macayla Weiner, Laurel Hiatt, Harriet Dashnow
Description

Spinocerebellar ataxia type 1 (SCA1) is an autosomal dominant neurodegenerative disorder caused by a heterozygous CAG repeat expansion in the coding region of ATXN1. The locus was first supported by linkage of autosomal dominant spinocerebellar ataxia to chromosome 6p/HLA in a large multigenerational kindred and later by identification of an unstable expanded ATXN1 CAG repeat that segregates with disease and shows repeat-length association with age at onset. Uploaded cohort studies support the clinical phenotype and biomarker profile of genetically confirmed SCA1, while mouse model studies support pathogenic gain-of-function and disease-relevant molecular and motor phenotypes.

Genetic evidence

Total: 12

Category
Type
Citation
Score
Details
Singular Evidence
Probands
6

A seven-generation autosomal dominant SCA kindred included 41 affected individuals, with 26 examined neurologically and 15 identified from medical records or family history; this is pre-ATXN1-repeat, chromosome 6p/HLA-linked SCA1-region evidence rather than repeat-specific genotyping.

Collective Evidence
Allele
2

Population genotyping of polyglutamine disease genes defined ATXN1 intermediate alleles as 36-38 CAG repeats and pathological alleles as 39-91 CAG repeats; among 13,668 long ATXN1 alleles, 636 were intermediate and 9 were in the pathological range (39-44), but CAT interruptions were not assessed.

Collective Evidence
Segregation
1.5

In the same seven-generation kindred, linkage analysis of a 93-member pedigree showed strong linkage of the SCA1-region disease locus to HLA loci, with maximum LOD score 5.83 at recombination fraction 0.12; this supports segregation of the linked region, not direct repeat-level segregation.

Statistics
Case-control data
6

These studies compare genetically confirmed SCA1 individuals with controls for balance, neuropsychological features, or longitudinal biomarkers, supporting the clinical phenotype and biomarker profile of genetically confirmed SCA1. While, these studies are not ideal case-control designs, collectively, they are supportive.

Experimental evidence

Total: 2.5

Category
Type
Citation
Score
Details
Function
Biochemical function
0.5

PMID 8358429 identified the disease-associated ATXN1-region CAG repeat within a transcribed sequence and showed the repeat is present in a ~10 kb mRNA expressed in multiple tissues, including brain and skeletal muscle; this is locus-level transcript evidence rather than direct biochemical function.

Rescue
Rescue in non-human model organism
2

In symptomatic B05 SCA1 mice expressing polyglutamine-expanded human ATXN1, AAV-delivered human ATXN1L alone or combined with miS1 targeting mutant ATXN1 improved rotarod motor phenotypes and partially normalized disease-associated cerebellar gene-expression changes.

Maximum score caps apply at evidence type, category, and supercategory levels, so section totals may be lower than the raw sum of row scores.