Curation FAME3 MARCHF6

Gene MARCHF6
Disease FAME3
Inheritance AD
Score

10 + 1.5 = 11.5 / 18

Genetic + experimental = total
Classification
0
18
Refuted
Moderate
Definitive
Last Updated 08/12/2025
Pubs Reviewed 3
Publication Span 17.33 years
Publication Interval 17.33 years
Curator(s) Macayla Weiner, Laurel Hiatt, Harriet Dashnow
Description

Autosomal dominant familial adult myoclonic epilepsy type 3 (FAME3) is associated with an intronic TTTTA/TTTCA repeat expansion in MARCH6/MARCHF6 on chromosome 5p15.2. The expansion was identified by genome sequencing and repeat-primed PCR in four European families with cortical/myoclonic tremor and epilepsy, co-segregated with disease, and was absent from controls in the reported analyses. Expansion length, particularly the TTTCA component, inversely correlated with age at seizure onset. Patient-derived blood cells and fibroblasts showed marked somatic instability and expansion-size variability.

Genetic evidence

Total: 10

Category
Type
Citation
Score
Details
Singular Evidence
Probands
1.5

MARCH6/MARCHF6 intronic TTTTA/TTTCA expansions identified in four European FAME families (two French, one Dutch, one German) using genome sequencing and RP-PCR.

Collective Evidence
Allele
1

Expansion length, mainly the TTTCA component, inversely correlated with age at seizure onset; no significant correlation was observed with tremor onset.

Collective Evidence
Segregation
1.5

The MARCH6 expansion co-segregated with FAME in the reported families, including Dutch Family 3 where an incompletely segregating CTNND2 variant was reclassified as likely benign.

Collective Evidence
Segregation
0

Large multigenerational families with FCMTE/FCTE show clear autosomal dominant segregation of the phenotype; however, linkage analyses excluded known loci (8q23.3-q24.1 and 2p11.1-q12.2), indicating genetic heterogeneity. These studies support heritable segregation of disease but do not demonstrate segregation of the MARCH6 repeat expansion specifically.

Statistics
Case-control data
6

MARCH6 expansions were identified in affected FAME families, while 83 European controls showed only 9-20 TTTTA repeats and no larger or TTTCA-containing alleles.

Experimental evidence

Total: 1.5

Category
Type
Citation
Score
Details
Function
Regulatory impact
0.5

RNA-seq and qRT-PCR in expansion-carrier blood cells and fibroblasts found no detectable change in MARCH6 RNA or protein levels and no massive intron 1 retention/splicing abnormality.

Functional Alteration
Patient cells
1

Patient-derived blood cells and fibroblasts showed extensive somatic instability, multiple expansion configurations, and micro-rearrangements in individuals with the largest MARCH6 expansions.

Maximum score caps apply at evidence type, category, and supercategory levels, so section totals may be lower than the raw sum of row scores.