Curation DM2 CNBP

Gene CNBP
Disease DM2
Inheritance AD
Score

8.5 + 6 = 14.5 / 18

Genetic + experimental = total
Classification
0
18
Refuted
Moderate
Definitive
Last Updated 07/21/2025
Pubs Reviewed 5
Publication Span 15.99 years
Publication Interval 15.99 years
Curator(s) Laurel Hiatt
Description

Myotonic dystrophy type 2 (DM2) is an autosomal dominant multisystem disorder caused by a CCTG repeat expansion in intron 1 of CNBP (formerly ZNF9). Genetic evidence includes genetically confirmed DM2 families with the expansion, allele-level differences between interrupted normal alleles and uninterrupted expanded alleles, and linkage/segregation support across European-origin kindreds. Experimental evidence supports toxic expanded CCUG RNA effects, including RNA foci, MBNL-dependent mis-splicing, disrupted Drosophila retinal morphology/apoptosis with partial molecular rescue by PKR inhibition, and altered CNBP/ZNF9 expression and splicing in DM2 patient muscle.

Genetic evidence

Total: 8.5

Category
Type
Citation
Score
Details
Singular Evidence
Probands
6

Haplotype analysis of 71 families with genetically confirmed DM2; all affected individuals were diagnosed with DM and tested positive for the CNBP/ZNF9 CCTG expansion.

Collective Evidence
Allele
1

DM2 alleles showed uninterrupted expansion of the CCTG portion of the intron 1 repeat tract (75–~11,000 repeats; mean ~5,000), whereas sequenced normal alleles were interrupted and controls showed no expansion.

Collective Evidence
Segregation
1.5

Linkage analysis across 17 European-origin PROMM/PDM/DM2 kindreds gave a peak multipoint LOD score of 19.521 at D3S3584; all affected individuals had the CNBP/ZNF9 CCTG expansion.

Experimental evidence

Total: 6

Category
Type
Citation
Score
Details
Models
Non-human model organism
2

Drosophila DM2-106 model expressing noncoding (CCUG)106 repeats recapitulated DM2-like RNA foci, MBNL-dependent mis-splicing, retinal/eye disruption, and apoptosis.

Function
Regulatory impact
0.5

In DM2-106 fly muscle, expanded CCUG repeats caused aberrant Fhos exon 24 inclusion (>70% vs ~30% in controls) and altered INSR, TNNT2, and Tnnt3 spliceosensor reporters.

Function
Biochemical function
0.5

Expanded (CCUG)106 transcripts formed predominantly nuclear RNA foci in fly muscle and retinal cells and sequestered MBNL proteins.

Functional Alteration
Non-patient cells
0.5

Expression of DM2-106 in Drosophila retina disrupted photoreceptor, cone, and pigment cell organization and induced apoptosis in developing eye imaginal discs.

Rescue
Rescue in non-human model organism
2

PKR-I treatment reduced/disrupted CCUG RNA foci and apoptosis in DM2-106 eye imaginal discs; the paper notes adult eye morphology was not rescued after larval feeding.

Function
Regulatory impact
0.5

In DM2 skeletal muscle, the mutant CNBP/ZNF9 allele showed retention of intron 1 sequences and aberrant intron 3-retaining transcripts, consistent with impaired splicing and reduced mRNA/protein levels.

Functional Alteration
Patient cells
1

Patient skeletal muscle biopsies and myoblast cultures from genetically confirmed DM2 cases showed reduced CNBP/ZNF9 mRNA/protein, altered localization, and aberrant splicing compared with normal and DM1 controls.

Maximum score caps apply at evidence type, category, and supercategory levels, so section totals may be lower than the raw sum of row scores.