Curation SCA7 ATXN7
12 + 6 = 18 / 18
Genetic evidence
Total: 12
Category | Type | Citation | Score | Details |
|---|---|---|---|---|
Singular Evidence | Probands | 6 | GeneReviews summarizes SCA7 as established by identification of a heterozygous abnormal ATXN7 CAG trinucleotide repeat expansion in a proband and notes that more than 1,000 affected individuals have been identified worldwide. | |
Collective Evidence | Allele | 2 | GeneReviews defines ATXN7 CAG repeat ranges as normal 7–27, mutable normal 28–33, pathogenic reduced penetrance 34–36, and pathogenic full penetrance 37–460 repeats; longer repeats correlate with earlier onset, greater severity, and faster progression. | |
Collective Evidence | Segregation | 1.5 | In 8 SCA7 families, RED detected 150-240 bp CAG expansion products in all affected individuals; expansions cosegregated with disease (P < 0.000001, n = 66), with repeat-size instability observed in affected offspring. | |
Statistics | Case-control data | 6 | Uploaded case-control/cohort studies support ATXN7 CAG expansion enrichment in SCA7: Chinese families showed affected alleles of 44-85 CAG versus 9-18 in 67 controls; Indian SCA7 families had 22 affected individuals with 40-94 CAG expansions and 382 population controls; rs6798742 haplotype association was replicated in Indian and Mexican expansion carriers. PMID 30721448 is a biomarker case-control study, not primary expansion-enrichment evidence. |
Experimental evidence
Total: 6
Category | Type | Citation | Score | Details |
|---|---|---|---|---|
Function | Biochemical function | 0.5 | Gene-level/locus-relevant evidence: ataxin-7 is a core STAGA/TFTC transcription co-activator component with histone acetyltransferase-related function; polyQ expansion alters this activity. | |
Function | Protein interaction | 0.5 | Gene-level/locus-relevant evidence: ataxin-7 is incorporated into STAGA/TFTC transcription co-activator complexes and mutant polyQ-expanded ataxin-7 perturbs interactions with transcriptional regulatory machinery. | |
Function | Regulatory impact | 0.5 | PolyQ-expanded ataxin-7 alters SAGA/STAGA/TFTC histone acetyltransferase activity and chromatin/transcriptional regulation in disease-relevant experimental systems. | |
Functional Alteration | Patient cells | 1 | Patient CNS tissue shows mutant ataxin-7 nuclear inclusions with ubiquitin-proteasome components and neurodegenerative pathology in SCA7-vulnerable regions; evidence is tissue/cell-level but not a separate locus-genotyping cohort. | |
Functional Alteration | Non-patient cells | 0.5 | Non-patient cell models expressing mutant polyQ-expanded ataxin-7 show enhanced nuclear localization/toxicity and activation of apoptotic pathways, supporting a repeat-length-dependent toxic gain of function. | |
Models | Non-human model organism | 2 | SCA7 mouse models expressing polyQ-expanded ataxin-7 develop gait ataxia, nuclear inclusions, Purkinje-cell dendritic degeneration, and non-cell-autonomous cerebellar pathology resembling human SCA7. | |
Models | Cell culture | 1 | Cell-culture models expressing polyQ-expanded ataxin-7 reproduce disease-relevant molecular phenotypes, including altered transcriptional regulation, mutant protein accumulation, and cellular toxicity. |